Banada, P. P. et al. Label-free detection of multiple bacterial pathogens using light-scattering sensor. Biosens. Bioelectron. 24, 1685–1692 (2009).
Gao, B. et al. Urease-induced metallization of gold nanorods for the sensitive detection of Salmonella enterica Choleraesuis through colorimetric ELISA. J. Dairy Sci. 102, 1997–2007 (2019).
Xue, L., Zheng, L., Zhang, H., Jin, X. & Lin, J. An ultrasensitive fluorescent biosensor using high gradient magnetic separation and quantum dots for fast detection of foodborne pathogenic bacteria. Sens. Actuators B Chem. 265, 318–325 (2018).
Wu, M. Y.-C. et al. Point-of-care detection devices for food safety monitoring: proactive disease prevention. Trends Biotechnol. 35, 288–300 (2017).
Lee, H. & Yoon, Y. Etiological agents implicated in foodborne illness World Wide. Food Sci. Anim. Resour. 41, 1–7 (2021).
Li, Y. et al. Argonaute-triggered visual and rebuilding-free foodborne pathogenic bacteria detection. J. Hazard. Mater. 454, 131485 (2023).
Wang, Z., Cheng, X., Ma, A., Jiang, F. & Chen, Y. Multiplexed food-borne pathogen detection using an argonaute-mediated digital sensor based on a magnetic-bead-assisted imaging transcoding system. Nat. Food 6, 170–181 (2025).
Veld, J. H. J. H. in’t. Microbial and biochemical spoilage of foods: an overview. Int. J. Food Microbiol. 33, 1–18 (1996).
Martinović, T., Andjelković, U., Gajdošik, M. Š, Rešetar, D. & Josić, D. Foodborne pathogens and their toxins. J. Proteom. 147, 226–235 (2016).
Zamfir, L.-G. et al. Assessment of biogenic amines produced by microorganisms as food spoilage indicators by sensitive detection using portable opto-electrochemical tools based on biosensors. Food Control 172, 111161 (2025).
Song, J. et al. Smartphone-Based SARS-CoV-2 and variants detection system using colorimetric DNAzyme reaction triggered by Loop-Mediated Isothermal Amplification (LAMP) with clustered regularly interspaced short palindromic repeats (CRISPR). ACS Nano 16, 11300–11314 (2022).
Guo, B. et al. The detection of Salmonella in food based on PCR combined with Pyrococcus furiosus Argonaute. Microchem. J. 206, 111311 (2024).
Swarts, D. C. et al. Autonomous generation and loading of DNA guides by bacterial argonaute. Mol. Cell 65, 985–998.e6 (2017).
Xun, G. et al. Argonaute with stepwise endonuclease activity promotes specific and multiplex nucleic acid detection. Bioresour. Bioprocess. 8, 46 (2021).
Lin, L. et al. Recombinase polymerase amplification combined with Pyrococcus furiosus Argonaute for fast Salmonella spp. testing in food safety. Int. J. Food Microbiol. 417, 110697 (2024).
Liu, Y. et al. Development and application of a novel recombinase polymerase amplification Pyrococcus furiosus argonaute system for rapid detection of goose parvovirus. Poult. Sci. 103, 104141 (2024).
Yu, Z. et al. LAMP combined with Pyrococcus furiosus Argonaute for the ultrasensitive and highly specific point-of-care test platform for Listeria monocytogenes detection. LWT 207, 116640 (2024).
Swarts, D. C. et al. Argonaute of the archaeon Pyrococcus furiosus is a DNA-guided nuclease that targets cognate DNA. Nucleic Acids Res. 43, 5120–5129 (2015).
Dizdaroglu, M., Laval, J. & Boiteux, S. Substrate specificity of the Escherichia coli endonuclease III: excision of thymine- and cytosine-derived lesions in DNA produced by radiation-generated free radicals. Biochemistry 32, 12105–12111 (1993).
Yao, M. & Kow, Y. W. Strand-specific cleavage of mismatch-containing DNA by deoxyinosine 3’-endonuclease from Escherichia coli. J. Biol. Chem. 269, 31390–31396 (1994).
Yu, Z. et al. LAMP assay coupled with a pyrococcus furiosus argonaute system for the rapid detection of porcine epidemic diarrhea virus. ACS Synth. Biol. https://doi.org/10.1021/acssynbio.4c00446 (2025).
Pang, F. et al. A handheld isothermal fluorescence detector for duplex visualization of aquatic pathogens via enhanced one-pot LAMP-PfAgo assay. Biosens. Bioelectron. 254, 116187 (2024).
Shi, Y., Tan, Z., Wu, D., Wu, Y. & Li, G. Pyrococcus furiosus argonaute based Alicyclobacillus acidoterrestrsis detection in fruit juice. Food Microbiol. 120, 104475 (2024).
Shi, Y. et al. Enzyme-assisted endogenous guide DNA generation-mediated pyrococcus furiosus argonaute for alicyclobacillus acidoterrestris detection. J. Agric. Food Chem. 72, 1354–1360 (2024).
Cai, M. et al. Detection of Escherichia coli O157:H7 in food based on magnetic separation and hybridization chain reaction. Food Control 177, 111446 (2025).
Mondal, B., Bhavanashri, N., Ramlal, S. & Kingston, J. Colorimetric DNAzyme biosensor for convenience detection of enterotoxin B Harboring Staphylococcus aureus from food samples. J. Agric. Food Chem. 66, 1516–1522 (2018).
Li, G. et al. Rapid and ultrasensitive detection of Staphylococcus aureus by a one-pot system integrating pyrococcus furiosus argonaute with loop-mediated isothermal amplification. J. Microbiol. Biotechnol. 35, e2504034 (2025).
Lv, X. et al. Quantitative detection of trace VBNC Cronobacter sakazakii by immunomagnetic separation in combination with PMAxx-ddPCR in dairy products. Food Microbiol. 99, 103831 (2021).
Wang, P., Chen, Q., Wang, Y., Sun, X. & Liu, Z. Development of a visual assay for detection of viable cronobacter sakazakii using RT-PSR and hydroxynaphthol blue indicator. Biology 14, 383 (2025).