Microbial Genetics and Genomics

ParaRef: a decontaminated reference database for parasite detection in ancient and modern metagenomic datasets | Genome Biology

October 23, 2025

Blake DP, Betson M. One health: parasites and beyond. Parasitology. 2017;144:1–6. PubMed Google Scholar Coulter JBS. Global importance…

SScience

iNOME-seq: in vivo simultaneous genome-wide mapping of chromatin accessibility, nucleosome positioning, DNA-binding protein sites, and DNA methylation in Arabidopsis | Genome Biology

October 22, 2025

Plant lines and growth conditions The plant lines used in this study were derived from A. thaliana wild-type…

GGenetics

SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations | Genome Biology

October 16, 2025

Model residuals of linear regression and logistic regression Linear regression and logistic regression are regular models to fit…

GGenetics

Genetic variation and genome-enabled selection of white lupin for key seed quality traits | BMC Genomics

October 16, 2025

Foyer CH, Lam H-M, Nguyen HT, Siddique KHM, Varshney RK, Colmer TD, et al. Neglecting legumes has compromised…

SScience

Reference genome bias in light of species-specific chromosomal reorganization and translocations | Genome Biology

October 15, 2025

Hohenlohe PA, Funk WC, Rajora OP. Population genomics for wildlife conservation and management. Mol Ecol. 2021;30:62–82. PubMed Google…

GGenetics

A novel gene expression stability metric to unveil homeostasis and regulation | Genome Biology

October 10, 2025

K-proportion and gene homeostasis Z-Index identify regulatory genes As cells of the same type and in the same…

TTechnology

The genetic influence of sex on gene expression for blood in pigs | BMC Genomics

October 9, 2025

Data summary We collected 386 blood samples with matched genotype and gene expression data from the PigGTEx project…

GGenetics

Genomic predictions for growth and feed efficiency traits in a duck breeding population | BMC Genomics

October 8, 2025

Animal population and phenotype data This study used a breeding population of Zhongxin white duck (a commercial breed…

HHealth

Comparative genomic analysis of Mycoplasma pneumoniae isolated in the United Kingdom, between 2016 and 2024 | BMC Genomics

October 8, 2025

The present work was undertaken to use WGS to detect MRMP, p1 type, MLST, as well as to…

SScience

Lineage-specific expansions of the Dicer gene family in tardigrades | BMC Genomics

October 7, 2025

Bernstein E, Caudy AA, Hammond SM, Hannon GJ. Role for a bidentate ribonuclease in the initiation step of…

GGenetics

Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE | Genome Biology

October 3, 2025

Model overview We consider the following model to incorporate both additive and interaction effects: $${Y}_{i}={\sum }_{j=1}^{M}{G}_{ji}{\beta }_{j}+{\sum }_{j=1}^{M}{S}_{ji}{\gamma…

GGenetics

Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics

October 3, 2025

Preparation of preliminary data In all samples, the proportion of clean reads was higher than 99.5% (Table S2),…