{"id":174370,"date":"2025-11-11T04:52:09","date_gmt":"2025-11-11T04:52:09","guid":{"rendered":"https:\/\/www.europesays.com\/ie\/174370\/"},"modified":"2025-11-11T04:52:09","modified_gmt":"2025-11-11T04:52:09","slug":"hybridization-mitigates-climate-change-risk-in-mountainous-birds","status":"publish","type":"post","link":"https:\/\/www.europesays.com\/ie\/174370\/","title":{"rendered":"Hybridization mitigates climate change risk in mountainous birds"},"content":{"rendered":"
  • \n

    Scheffers, B. R. et al. The broad footprint of climate change from genes to biomes to people. Science 354<\/b>, aaf7671 (2016).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Aitken, S. N. & Whitlock, M. C. Assisted gene flow to facilitate local adaptation to climate change. Annu. Rev. Ecol. Evol. Syst. 44<\/b>, 367\u2013388 (2013).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Browne, L. et al. Adaptational lag to temperature in valley oak (Quercus lobata) can be mitigated by genome-informed assisted gene flow. Proc. Natl Acad. Sci. USA 116<\/b>, 25179\u201325185 (2019).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    De-Kayne, R. et al. Genomic architecture of adaptive radiation and hybridization in Alpine whitefish. Nat. Commun. 13<\/b>, 4479 (2022).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Kagawa, K. & Takimoto, G. Hybridization can promote adaptive radiation by means of transgressive segregation. Ecol. Lett. 21<\/b>, 264\u2013274 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Brauer, C. J. et al. Natural hybridization reduces vulnerability to climate change. Nat. Clim. Chang 13<\/b>, 282\u2013289 (2023).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Chen, Y. et al. The combination of genomic offset and niche modelling provides insights into climate change-driven vulnerability. Nat. Commun. 13<\/b>, 4821 (2022).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Rahbek, C. et al. Building mountain biodiversity: geological and evolutionary processes. Science 365<\/b>, 1114\u20131119 (2019).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Fjelds\u00e5, J., Bowie, R. C. K. & Rahbek, C. The role of mountain ranges in the diversification of birds. Annu. Rev. Ecol. Evol. Syst. 43<\/b>, 249\u2013265 (2012).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Wu, Y. J. et al. Explaining the species richness of birds along a subtropical elevational gradient in the Hengduan Mountains. J. Biogeogr. 40<\/b>, 2310\u20132323 (2013).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Qu, Y. et al. Long-term isolation and stability explain high genetic diversity in the Eastern Himalaya. Mol. Ecol. 23<\/b>, 705\u2013720 (2014).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Qu, Y. et al. Lineage diversification and historical demography of a montane bird Garrulax elliotii\u2014implications for the Pleistocene evolutionary history of the eastern Himalayas. BMC Evol. Biol. 11<\/b>, 174 (2011).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Chen, Y. et al. 2023. Alpine burrow-sharing mammals and birds show similar population-level climate change risks. Nat. Clim. Change 13<\/b>, 990\u2013996 (2023).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Ruegg, K. et al. Ecological genomics predicts climate vulnerability in an endangered southwestern songbird. Ecol. Lett. 21<\/b>, 1085\u20131096 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Bay, R. A. et al. Genomic signals of selection predict climate driven population declines in a migratory bird. Science 359<\/b>, 83\u201386 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Li, C. et al. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience 3<\/b>, 27 (2014).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Pirri, F. et al. Selection-driven adaptation to the extreme Antarctic environment in Emperor penguin. Heredity 129<\/b>, 317\u2013326 (2022).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Wang, L. C. et al. Involvement of the Arabidopsis HIT1\/AtVPS53 tethering protein homologue the acclimation of the plasma membrane to heat stress. J. Exp. Bot. 62<\/b>, 3609\u20133620 (2011).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Pi\u00f1ol, R. A. et al. Preoptic BRS3 neurons increase body temperature and heart rate via multiple pathways. Cell Metab. 33<\/b>, 1389\u20131403 (2021).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Guilherme, A. et al. Neuronal modulation of brown adipose activity through perturbation of white adipocyte lipogenesis. Mol. Metab. 16<\/b>, 116\u2013125 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Graham, A. M. et al. Adaptive introgression of the beta-globin cluster in two Andean waterfowl. Heredity 127<\/b>, 107\u2013123 (2021).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Pizzagalli, M. D., Bensimon, A. & Superti-Furga, G. A guide to plasma membrane solute carrier proteins. FEBS J. 288<\/b>, 2784\u20132835 (2020).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Zhang, Y., Guo, W., Zhang, Y., Zhang, H. & Wu, C. Insights into hypoxic adaptation in Tibetan chicken embryos from comparative proteomics. Comp. Biochem. Physiol. Part D. 31<\/b>, 100602 (2019).<\/p>\n

    CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Qu, Y. et al. Rapid phenotypic evolution with shallow genomic differentiation during early stages of high elevation adaptation in Eurasian tree sparrows. Natl Sci. Rev. 7<\/b>, 113\u2013127 (2020).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Huerta-S\u00e1nchez, E. et al. Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA. Nature 512<\/b>, 194\u2013197 (2014).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Marchese, C. Biodiversity hotspots: a shortcut for a more complicated concept. Glob. Ecol. Conserv. 3<\/b>, 297\u2013309 (2015).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    He, J. K., Lin, S. L., Li, J. T., Yu, J. H. & Jiang, H. S. Evolutionary history of zoogeographical regions surrounding the Tibetan Plateau. Commun. Biol. 3<\/b>, 415 (2020).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Freeman, B. G., Scholer, M. N., Ruiz-Gutierrez, V. & Fitzpatrick, J. W. Climate change causes upslope shifts and mountaintop extirpations in a tropical bird community. Proc. Natl Acad. Sci. USA 115<\/b>, 11982\u201311987 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Qu et al. The influence of geological events on the endemism of East Asian birds studied through comparative phylogeography. J. Biogeogr. 42<\/b>, 179\u2013192 (2015).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Song, G. et al. Phylogeography of the Alcippe morrisonia (Aves: Timaliidae): long population history beyond late Pleistocene glaciations. BMC Evol. Biol. 9<\/b>, 143 (2009).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Excoffier, L., Dupanloup, I., Huerta-Sanchez, E., Sousa, V. C. & Foll, M. Robust demographic inference from genomic and SNP data. PLoS Genet. 9<\/b>, e1003905 (2013).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Li, H. & Durbin, R. Inference of human population history from individual whole-genome sequences. Nature 475<\/b>, 493\u2013496 (2011).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19<\/b>, 1655\u20131664 (2009).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Bailey, R. I. Bayesian hybrid index and genomic cline estimation with the R package gghybrid. Mol. Ecol. Resour. 24<\/b>, e13910 (2024).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Blischak, P. D. et al. HyDe: a python package for genome-scale hybridization detection. Syst. Biol. 67<\/b>, 821\u2013829 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Schrider, D. R., Ayroles, J., Matute, D. R. & Kern, A. D. Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia. PLoS Genet. 14<\/b>, e1007341 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Atwater, D. Z., Ervine, C. J. & Barney, N. Climatic niche shifts are common in introduced plants. Nat. Ecol. Evol. 2<\/b>, 34\u201343 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Petitpierre, P. et al. Climatic niche shifts are rare among terrestrial plant invaders. Science 335<\/b>, 1344\u20131348 (2012).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Liu, C., Wolter, C., Xian, W. & Jeschke, J. M. Most invasive species largely conserve their climatic niche. Proc. Natl Acad. Sci. USA 38<\/b>, 23643\u201323651 (2020).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Brown, J. L. & Carnaval, A. C. A tale of two niches: methods, concepts, and evolution. Front. Biogeogr. 11<\/b>, e44158 (2019).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Thuiller, W., Lafourcade, B., Engler, R. & Ara\u00fajo, M. B. BIOMOD\u2014a platform for ensemble forecasting of species distributions. Ecography 32<\/b>, 369\u2013373 (2009).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Guo, Y., Li, X., Zhao, Z. & Nawaz, Z. Predicting the impacts of climate change, soils and vegetation types on the geographic distribution of Polyporus umbellatus in China. Sci. Total Environ. 648<\/b>, 1\u201311 (2019).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Fournier-Level, A. et al. A map of local adaptation in Arabidopsis thaliana. Science 34<\/b>, 86\u201380 (2011).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Frichot, E. & Fran\u00e7ois, O. L. E. A. An R package for landscape and ecological association studies. Methods Ecol. Evol. 6<\/b>, 925\u2013929 (2015).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Forester, B. R. et al. Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes. Mol. Ecol. 25<\/b>, 104\u2013120 (2016).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Dikmen, S. et al. Genome-wide association mapping for identification of quantitative trait loci for rectal temperature during heat stress in Holstein cattle. PLoS ONE 8<\/b>, e69202 (2013).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Kim, T. W. et al. A critical role for IRAK4 kinase activity in Toll-like receptor\u2013mediated innate immunity. J. Exp. Med. 204<\/b>, 1025\u20131036 (2007).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Weldenegodguad, M. et al. Adipose gene expression profiles reveal insights into the adaptation of northern Eurasian semi-domestic reindeer (Rangifer tarandus). Commun. Biol. 4<\/b>, 1170 (2021).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Heinrich, E. C. et al. Increased levels of interleukin-6 (IL-6) in Andean males with chronic mountain sickness and sea-level participants after one day at high altitude may reflect differences in IL-6 regulation. FASEB J. 32<\/b>, lb479 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Ferrer-Admetlla, A., Liang, M., Korneliussen, T. & Nielsen, R. On detecting incomplete soft or hard selective sweeps using haplotype structure. Mol. Biol. Evol. 31<\/b>, 1275\u20131291 (2014).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Voight, B. F., Kudaravalli, S., Wen, X. & Pritchard, J. K. A map of recent positive selection in the human genome. PLoS Biol. 4<\/b>, e72 (2006).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Ellis, N., Smith, S. J. & Pitcher, C. R. Gradient forests: calculating importance gradients on physical predictors. Ecology 93<\/b>, 156\u2013168 (2012).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Haller, B. C. & Messer, P. W. SLiM 4: multispecies eco-evolutionary modeling. Am. Nat. 201<\/b>, E127 (2023).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Matz, M. V., Treml, E. A., Aglyamova, G. V. & Bay, L. K. Potential and limits for rapid genetic adaptation to warming in a Great Barrier Reef coral. PLoS Genet. 14<\/b>, e1007220 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Matz, M. V., Treml, E. A. & Haller, B. C. Estimating the potential for coral adaptation to global warming across the Indo-West Pacific. Glob. Change Biol. 26<\/b>, 3473\u20133481 (2020).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Dong, F. et al. Potential millennial-scale avian declines by humans in southern China. Glob. Change Biol. 28<\/b>, 5505\u20135513 (2022).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Bird, J. P. et al. Generation lengths of the world\u2019s birds and their implications for extinction risk. Conserv. Biol. 34<\/b>, 1252\u20131261 (2020).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Clarke, R. T. et al. Confidence limits for regression relationships between distance matrices: estimating gene flow with distance. J. Agric. Biol. Environ. Stat. 7<\/b>, 361\u2013372 (2002).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Rieseberg, L. H., Archer, M. A. & Wayne, R. K. Transgressive segregation, adaptation and speciation. Heredity 83<\/b>, 363\u2013372 (1999).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Seehausen, O. Hybridization and adaptive radiation. Trends Ecol. Evol. 19<\/b>, 198\u2013207 (2004).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Rieseberg, L. H. Hybrid speciation in wild sunflowers. Ann. Mo. Bot. Gard. 93<\/b>, 34\u201348 (2006).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Rieseberg, L. H. et al. Major ecological transitions in wild sunflowers facilitated by hybridization. Science 301<\/b>, 1211\u20131216 (2003).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Ungerer, M. C., Baird, S. J. E., Pan, J. & Rieseberg, L. H. Rapid hybrid speciation in wild sunflowers. Proc. Natl Acad. Sci. USA 95<\/b>, 11757\u201311762 (1998).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Stelkens, R. B., Brockhurst, M. A., Hurst, G. D. D. & Greig, D. Hybridization facilitates evolutionary rescue. Evol. Appl. 7<\/b>, 1209\u20131217 (2014).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Stelkens, R. B., Brockhurst, M. A., Hurst, G. D. D., Miller, E. L. & Greig, D. The effect of hybrid transgression on environmental tolerance in experimental yeast crosses. J. Evol. Biol. 27<\/b>, 2507\u20132519 (2014).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Zhang, D. C., Zhang, Y. H., Boufford, D. E. & Sun, H. Elevational patterns of species richness and endemism for some important taxa in the Hengduan Mountains, southwestern China. Biodivers. Conserv. 18<\/b>, 699\u2013716 (2009).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Zhang, R. Z., Zheng, D., Yang, Q. Y. & Liu, Y. H. Physical Geography of Hengduan Mountains (Science Press, 1997).<\/p>\n<\/li>\n

  • \n

    Allendorf, F. W., Leary, R. F., Spruell, P. & Wenburg, J. K. The problems with hybrids: setting conservation guidelines. Trends Ecol. Evol. 16<\/b>, 613\u2013622 (2001).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Todesco, M. et al. Hybridization and extinction. Evol. Appl. 9<\/b>, 892\u2013908 (2016).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Hirashiki, C., Kareiva, P. & Marvier, M. Concern over hybridization risks should not preclude conservation interventions. Conserv. Sci. Pract. 3<\/b>, e424 (2021).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Chen, Y. et al. Large-scale genome-wide reveals climate adaptive variability in a cosmopolitan pest. Nat. Commun. 12<\/b>, 7206 (2021).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Urban, M. C. Escalator to extinction. Proc. Natl Acad. Sci. USA 115<\/b>, 11871\u201311873 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Chen, S. Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp. iMeta 2<\/b>, e107 (2023).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows\u2013Wheeler transform. Bioinformatics 25<\/b>, 1754\u20131760 (2009).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Van Der Auwera, G. & O\u2019Connor, B. D. Genomics in the Cloud: Using Docker, GATK, and WDL in Terra (O\u2019Reilly Media, 2020).<\/p>\n<\/li>\n

  • \n

    Li, H. et al. The sequence alignment\/map format and SAMtools. Bioinformatics 25<\/b>, 2078\u20132079 (2009).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Chang, C. C. et al. Second-generation PLINK: rising to the challenge of larger and richer datasets. Gigascience 4<\/b>, 7 (2015).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Lefort, V., Desper, R. & Gascuel, O. FastME 2.0: a comprehensive, accurate, and fast distance-based phylogeny inference program. Mol. Biol. Evol. 32<\/b>, 2798\u20132800 (2015).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Wiens, B. J., DeCicco, L. H. & Colella, J. P. triangulaR: an R package for identifying AIMs and 825 building triangle plots using SNP data from hybrid zones. Heredity 134<\/b>, 251\u2013262 (2025).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Danecek, P. et al. Twelve years of SAMtools and BCFtools. GigaScience 10<\/b>, giab008 (2021).<\/p>\n<\/li>\n

  • \n

    Martin, S. H., Davey, J. W. & Jiggins, C. D. Evaluating the use of ABBA\u2013BABA statistics to locate introgressed loci. Mol. Biol. Evol. 32<\/b>, 244\u2013257 (2015).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Cai et al. Near-complete phylogeny and taxonomic revision of the world\u2019s babblers (Aves: Passeriformes). Mol. Phylogenet. Evol. 130<\/b>, 346\u2013356 (2019).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Ericson, P. G. & Irestedt, M. Comparative population genomics reveals glacial cycles to drive diversifications in tropical montane birds (Aves, Timaliidae). Avian Res. 13<\/b>, 100063 (2022).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Browning, S. R. & Browning, B. L. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81<\/b>, 1084\u20131097 (2007).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Xiao, H. et al. Adaptive and maladaptive introgression in grapevine domestication. Proc. Natl Acad. Sci. USA 120<\/b>, e2222041120 (2023).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Lukicheva, S. & Mardulyn, P. Whole-genome sequencing reveals asymmetric introgression between two sister species of cold-resistant leaf beetles. Mol. Ecol. 30<\/b>, 4077\u20134089 (2021).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Geneva, A. J., Muirhead, C. A., Kingan, S. B. & Garrigan, D. A new method to scan genomes for introgression in a secondary contact model. PLoS ONE 10<\/b>, e0118621 (2015).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Hudson, R. R. A new statistic for detecting genetic differentiation. Genetics 155<\/b>, 2011\u20132014 (2000).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Tian, J. et al. Projections of precipitation over China based on CMIP6 models. Stoch. Environ. Res. Risk Assess. 35<\/b>, 831\u2013848 (2021).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Lu, K. et al. Evaluating observed and future spatiotemporal changes in precipitation and temperature across China based on CMIP6-GCMs. Int. J. Climatol. 42<\/b>, 7703\u20137729 (2022).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Boria, R. A., Olson, L. E., Goodman, S. M. & Anderson, R. P. Spatial filtering to reduce sampling bias can improve the performance of ecological niche models. Ecol. Model. 275<\/b>, 73\u201377 (2014).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Liu, C. R., White, M. & Newell, G. Selecting thresholds for the prediction of species occurrence with presence-only data. J. Biogeogr. 40<\/b>, 778\u2013789 (2013).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Ge, S. X., Jung, D. & Yao, R. ShinyGO: a graphical gene-set enrichment tool for animals and plants. Bioinformatics 36<\/b>, 2628\u20132629 (2020).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Szpiech, Z. A. & Hernandez, R. D. Selscan: an efficient multithreaded program to perform EHH-based scans for positive selection. Mol. Biol. Evol. 31<\/b>, 2824\u20132827 (2014).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Meier, J. I., Marques, D. A., Wager, C. E., Excoffier, L. & Seehausen, O. Genomics of parallel ecological speciation in lake Victoria cichilids. Mol. Biol. Evol. 35<\/b>, 1489\u20131506 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Kim-Hellmuth, S. et al. Genetic regulatory effects modified by immune activation contribute to autoimmune disease association. Nat. Commun. 8<\/b>, 266 (2017).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Blumstein, M. et al. Protocol for projecting allele frequency change under future climate change at adaptive-associated loci. STAR Protoc. 1<\/b>, 100061 (2020).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Gain, C. et al. A quantitative theory for genomic offset statistics. Mol. Biol. Evol. 40<\/b>, msad140 (2023).<\/p>\n

    Article<\/a>\u00a0
    \n     CAS<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Yair, S. & Coop, G. Population differentiation of polygenic score predictions under stabilizing selection. Philos. Trans. R. Soc. B 377<\/b>, 20200416 (2022).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Peterman, W. E. ResistanceGA: an R package for the optimization of resistance surfaces using genetic algorithms. Methods Ecol. Evol. 9<\/b>, 1638\u20131647 (2018).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Keenan, K., Mcginnity, P., Cross, T. F., Crozier, W. W. & Prod\u00f6hl, P. A. diveRsity: an R package for the estimation and exploration of population genetics parameters and their associated errors. Methods Ecol. Evol. 4<\/b>, 782\u2013788 (2013).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Bates, D., M\u00e4chler, M., Bolker, B. & Walker, S. Fitting linear mixed effects models using lme4. J. Stat. Softw. 67<\/b>, 1\u201348 (2015).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Anderson, D. R. & Burnham, K. P. Avoiding pitfalls when using information-theoretic methods. J. Wildl. Manag. 66<\/b>, 912\u2013918 (2002).<\/p>\n

    Article<\/a>\u00a0
    \n
    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Zhang, S. et al. Code and data for \u2018Hybridisation mitigates climate change risk in mountainous birds\u2019. Zenodo https:\/\/doi.org\/10.5281\/zenodo.17271739<\/a> (2025).<\/p>\n<\/li>\n

  • \n

    Danielson, J. J. & Gesch, D. B. Global Multi-resolution Terrain Elevation Data 2010 (GMTED2010) US Geological Survey Open-File Report 2011-1073, 26 p (2011).<\/p>\n<\/li>\n","protected":false},"excerpt":{"rendered":"Scheffers, B. R. et al. The broad footprint of climate change from genes to biomes to people. Science…\n","protected":false},"author":2,"featured_media":174371,"comment_status":"","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[269],"tags":[1868,442,6134,6128,69342,18,440,29959,18883,910,19,17,133],"class_list":{"0":"post-174370","1":"post","2":"type-post","3":"status-publish","4":"format-standard","5":"has-post-thumbnail","7":"category-environment","8":"tag-biodiversity","9":"tag-climate-change","10":"tag-climate-change-climate-change-impacts","11":"tag-conservation-biology","12":"tag-ecological-genetics","13":"tag-eire","14":"tag-environment","15":"tag-environmental-law-policy-ecojustice","16":"tag-evolutionary-ecology","17":"tag-general","18":"tag-ie","19":"tag-ireland","20":"tag-science"},"share_on_mastodon":{"url":"https:\/\/pubeurope.com\/@ie\/115529275351410306","error":""},"_links":{"self":[{"href":"https:\/\/www.europesays.com\/ie\/wp-json\/wp\/v2\/posts\/174370","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.europesays.com\/ie\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.europesays.com\/ie\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.europesays.com\/ie\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.europesays.com\/ie\/wp-json\/wp\/v2\/comments?post=174370"}],"version-history":[{"count":0,"href":"https:\/\/www.europesays.com\/ie\/wp-json\/wp\/v2\/posts\/174370\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.europesays.com\/ie\/wp-json\/wp\/v2\/media\/174371"}],"wp:attachment":[{"href":"https:\/\/www.europesays.com\/ie\/wp-json\/wp\/v2\/media?parent=174370"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.europesays.com\/ie\/wp-json\/wp\/v2\/categories?post=174370"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.europesays.com\/ie\/wp-json\/wp\/v2\/tags?post=174370"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}