{"id":26843,"date":"2025-08-27T16:26:28","date_gmt":"2025-08-27T16:26:28","guid":{"rendered":"https:\/\/www.europesays.com\/ie\/26843\/"},"modified":"2025-08-27T16:26:28","modified_gmt":"2025-08-27T16:26:28","slug":"genetic-architecture-of-a-light-temperature-coincidence-detector","status":"publish","type":"post","link":"https:\/\/www.europesays.com\/ie\/26843\/","title":{"rendered":"Genetic architecture of a light-temperature coincidence detector"},"content":{"rendered":"
  • \n

    Arana, M. V., Tognacca, R. S., Estravis-Barcal\u00e1, M., S\u00e1nchez, R. A. & Botto, J. F. Physiological and molecular mechanisms underlying the integration of light and temperature Cues in Arabidopsis Thaliana Seeds. Plant Cell Environ. 12<\/b>, 3113\u20133121 (2017).<\/p>\n<\/li>\n

  • \n

    Blanchard, M. G. & Runkle, E. S. Temperature during the day, but not during the night, controls flowering of Phalaenopsis orchids. J. Exp. Bot. 57<\/b>, 4043\u20134049 (2006).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Cao, S. et al. Genetic architecture underlying light and temperature mediated flowering in Arabidopsis, rice, and temperate cereals. N. Phytol. 230<\/b>, 1731\u20131745 (2021).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Bendix, C., Marshall, C. M. & Harmon, F. G. Circadian clock genes universally control key agricultural traits. Mol. Plant 8<\/b>, 1135\u20131152 (2015).<\/p>\n<\/li>\n

  • \n

    Blair, E. J. et al. Contribution of time of day and the circadian clock to the heat stress responsive transcriptome in Arabidopsis. Sci. Rep. 9<\/b>, 4814 (2019).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Covington, M. F., Maloof, J. N., Straume, M., Kay, S. A. & Harmer, S. L. Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biol. 9<\/b>, R130 (2008).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Vialet-Chabrand, S. R., Matthews, J. S., Simkin, A., Raines, C. A. & Lawson, T. Importance of fluctuations in light on plant photosynthetic acclimation. Plant Physiol. 173<\/b>, 2163\u20132179 (2017).<\/p>\n<\/li>\n

  • \n

    Kami, C., Lorrain, S., Hornitschek, P. & Fankhauser, C. in Current Topics in Developmental Biology(Academic Press, 2010).<\/p>\n<\/li>\n

  • \n

    Hayes, S., Schachtschabel, J., Mishkind, M., Munnik, T. & Arisz, S. A. Hot topic: Thermosensing in plants. Plant Cell Environ. 44<\/b>, 2018\u20132033 (2021).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Penfield, S. Temperature perception and signal transduction in plants. N. Phytol. 179<\/b>, 615\u2013628 (2008).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Jung, H.-S. et al. Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. Proc. Natl. Acad. Sci. USA 110<\/b>, 14474\u201314479 (2013).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Jung, J.-H. et al. Phytochromes function as thermosensors in Arabidopsis. Science 354<\/b>, 886\u2013889 (2016).<\/p>\n<\/li>\n

  • \n

    Legris, M. et al. Phytochrome B integrates light and temperature signals in Arabidopsis. Science 354<\/b>, 897\u2013900 (2016).<\/p>\n<\/li>\n

  • \n

    Okajima, K., Kashojiya, S. & Tokutomi, S. Photosensitivity of kinase activation by blue light involves the lifetime of a cysteinyl-flavin adduct intermediate, S390, in the photoreaction cycle of the LOV2 domain in phototropin, a plant blue light receptor. J. Biol. Chem. 287<\/b>, 40972\u201340981 (2012).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Kumar, S. V. & Wigge, P. A. H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis. Cell 140<\/b>, 136\u2013147 (2010).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Christie, J. M. Phototropin Blue-Light receptors. Annu. Rev. Plant Biol. 58<\/b>, 21\u201345 (2007).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Aihara, Y., Tabata, R., Suzuki, T., Shimazaki, K. & Nagatani, A. Molecular basis of the functional specificities of phototropin 1 and 2. Plant J. 56<\/b>, 364\u2013375 (2008).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Jarillo, J. A. et al. Phototropin-related NPL1 controls chloroplast relocation induced by blue light. Nature 410<\/b>, 952\u2013954 (2001).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Kagawa, T. et al. Arabidopsis NPL1: A phototropin homolog controlling the chloroplast high-light avoidance response. Science 291<\/b>, 2138\u20132141 (2001).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Sakai, T. et al. Arabidopsis nph1 and npl1: Blue light receptors that mediate both phototropism and chloroplast relocation. Proc. Natl Acad. Sci. USA 98<\/b>, 6969\u20136974 (2001).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Kinoshita, T. et al. phot1 and phot2 mediate blue light regulation of stomatal opening. Nature 414<\/b>, 656\u2013660 (2001).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Christie, J., Suetsugu, N., Sullivan, S. & Wada, M. Shining light on the function of NPH3\/RPT2-like proteins in phototropin signalling. Plant Physiol. 176<\/b>, 1015\u20131024 (2017).<\/p>\n<\/li>\n

  • \n

    Bas-Orth, C., Tan, Y.-W., Oliveira, A. M. M., Bengtson, C. P. & Bading, H. The calmodulin-binding transcription activator CAMTA1 is required for long-term memory formation in mice. Learn. Mem. 23<\/b>, 313\u2013321 (2016).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Doherty, C. J., Van Buskirk, H. A., Myers, S. J. & Thomashow, M. F. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing Tolerance. Plant Cell 21<\/b>, 972\u2013984 (2009).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Kim, Y. S. et al. CAMTA-Mediated regulation of salicylic acid immunity pathway genes in Arabidopsis exposed to low temperature and pathogen infection[OPEN]. Plant Cell 29<\/b>, 2465\u20132477 (2017).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Zhang, L., Du, L., Shen, C., Yang, Y. & Poovaiah, B. W. Regulation of plant immunity through ubiquitin-mediated modulation of Ca2+\u2013calmodulin\u2013AtSR1\/CAMTA3 signaling. Plant J. 78<\/b>, 269\u2013281 (2014).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Long, C. et al. Ataxia and Purkinje cell degeneration in mice lacking the CAMTA1 transcription factor. Proc. Natl Acad. Sci. USA 111<\/b>, 11521\u201311526 (2014).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Song, K. et al. The transcriptional coactivator CAMTA2 stimulates cardiac growth by opposing class II histone deacetylases. Cell 125<\/b>, 453\u2013466 (2006).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Kim, Y., Park, S., Gilmour, S. J. & Thomashow, M. F. Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis. Plant J. 75<\/b>, 364\u2013376 (2013).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Jiang, X., Hoehenwarter, W., Scheel, D. & Lee, J. Phosphorylation of the CAMTA3 transcription factor triggers its destabilization and nuclear export. Plant Physiol. 184<\/b>, 1056\u20131071 (2020).<\/p>\n<\/li>\n

  • \n

    Chao, L., Kim, Y., Gilmour, S. J. & Thomashow, M. F. Temperature modulation of CAMTA3 gene induction activity is mediated through the DNA binding domain. Plant J. 112<\/b>, 235\u2013248 (2022).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Jung, J.-H. et al. A prion-like domain in ELF3 functions as a thermosensor in Arabidopsis. Nature 585<\/b>, 256\u2013260 (2020).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Strasser, B., Alvarez, M. J., Califano, A. & Cerd\u00e1n, P. D. A complementary role for ELF3 and TFL1 in the regulation of flowering time by ambient temperature. Plant J. 58<\/b>, 629\u2013640 (2009).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Susila, H. et al. Florigen sequestration in cellular membranes modulates temperature-responsive flowering. Science 373<\/b>, 1137\u20131142 (2021).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Benn, G. et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J. Cell Mol. Biol. 80<\/b>, 82\u201392 (2014).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Mockler, T. C. et al. The diurnal project: Diurnal and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harb. Symp. Quant. Biol. 72<\/b>, 353\u2013363 (2007).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    O\u2019Malley, R. C. et al. Cistrome and epicistrome features shape the regulatory DNA landscape. Cell 165<\/b>, 1280\u20131292 (2016).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Kidokoro, S. et al. Different cold-signaling pathways function in the responses to rapid and gradual decreases in temperature. Plant Cell 29<\/b>, 760\u2013774 (2017).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Weirauch, M. T. et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell 158<\/b>, 1431\u20131443 (2014).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Liu, C. et al. Direct interaction of AGL24 and SOC1 integrates flowering signals in Arabidopsis. Development 135<\/b>, 1481\u20131491 (2008).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Urrea Castellanos, R. et al. FORGETTER2 protein phosphatase and phospholipase D modulate heat stress memory in Arabidopsis. Plant J. 104<\/b>, 7\u201317 (2020).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Jeon, J., Cho, C., Lee, M. R., Van Binh, N. & Kim, J. CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate lateral root development in response to cold stress in arabidopsis. Plant Cell 28<\/b>, 1828\u20131843 (2016).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    \u0160im\u00e1\u0161kov\u00e1, M. et al. Cytokinin response factors regulate PIN-FORMED auxin transporters. Nat. Commun. 6<\/b>, 8717 (2015).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Shao, J., Liu, X., Wang, R., Zhang, G. & Yu, F. The Over-Expression of an arabidopsis B3 transcription factor, ABS2\/NGAL1, leads to the loss of flower petals. PLOS ONE 7<\/b>, e49861 (2012).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Shang, J.-Y. et al. COMPASS functions as a module of the INO80 chromatin remodeling complex to mediate histone H3K4 methylation in Arabidopsis. Plant Cell 33<\/b>, 3250\u20133271 (2021).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Kardailsky, I. et al. Activation tagging of the floral inducer FT. Science 286<\/b>, 1962\u20131965 (1999).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Corbesier, L. et al. FT protein movement contributes to long-distance signaling in floral induction of Arabidopsis. Science 316<\/b>, 1030\u20131033 (2007).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Wickland, D. P. & Hanzawa, Y. The FLOWERING LOCUS T\/TERMINAL FLOWER 1 Gene family: Functional evolution and molecular mechanisms. Mol. Plant 8<\/b>, 983\u2013997 (2015).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Li, Z. et al. Safflower CtFT genes orchestrating flowering time and flavonoid biosynthesis. BMC Plant Biol. 24<\/b>, 1232 (2024).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Buer, C. S., Imin, N. & Djordjevic, M. A. Flavonoids: New roles for old molecules. J. Integr. Plant Biol. 52<\/b>, 98\u2013111 (2010).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Schulz, E., Tohge, T., Zuther, E., Fernie, A. R. & Hincha, D. K. Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana. Sci. Rep. 6<\/b>, 34027 (2016).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Knauer, T., D\u00fcmmer, M., Landgraf, F. & Forreiter, C. A Negative effector of blue light-induced and gravitropic bending in arabidopsis. Plant Physiol. 156<\/b>, 439\u2013447 (2011).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Imaizumi, T., Schultz, T. F., Harmon, F. G., Ho, L. A. & Kay, S. A. FKF1 F-Box Protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis. Science 309<\/b>, 293\u2013297 (2005).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Imaizumi, T., Tran, H. G., Swartz, T. E., Briggs, W. R. & Kay, S. A. FKF1 is essential for photoperiodic-specific light signalling in Arabidopsis. Nature 426<\/b>, 302\u2013306 (2003).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Baudry, A. et al. F-Box proteins FKF1 and LKP2 Act in concert with ZEITLUPE to control Arabidopsis clock progression[C][W]. Plant Cell 22<\/b>, 606\u2013622 (2010).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Takase, T. et al. LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1. Plant J. 67<\/b>, 608\u2013621 (2011).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Zhao, Z. et al. CRY2 interacts with CIS1 to regulate thermosensory flowering via FLM alternative splicing. Nat. Commun. 13<\/b>, 7045 (2022).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Halliday, K. J., Salter, M. G., Thingnaes, E. & Whitelam, G. C. Phytochrome control of flowering is temperature sensitive and correlates with expression of the floral integrator FT. Plant J. 33<\/b>, 875\u2013885 (2003).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Halliday, K. J. & Whitelam, G. C. Changes in photoperiod or temperature alter the functional relationships between phytochromes and reveal roles for phyD and phyE. Plant Physiol. 131<\/b>, 1913\u20131920 (2003).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Burko, Y. et al. PIF7 is a master regulator of thermomorphogenesis in shade. Nat. Commun. 13<\/b>, 4942 (2022).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Mehta, D. et al. Twilight length alters growth and flowering time in Arabidopsis via LHY\/CCA1. Sci. Adv. 10<\/b>, eadl3199 (2024).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Sullivan, S. et al. Regulation of plant phototropic growth by NPH3\/RPT2-like substrate phosphorylation and 14-3-3 binding. Nat. Commun. 12<\/b>, 6129 (2021).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Pedmale, U. V. & Liscum, E. Regulation of phototropic signaling in Arabidopsis via phosphorylation state changes in the phototropin 1-interacting orotein NPH3*. J. Biol. Chem. 282<\/b>, 19992\u201320001 (2007).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Haga, K., Mayama, T., yamada, M. & Sakai, T. Arabidopsis ROOT PHOTOTROPISM2 contributes to the adaptation to high-intensity light in phototropic responses | Plant Cell 4<\/b>, 1098\u20131112 (2015).<\/p>\n<\/li>\n

  • \n

    Motchoulski, A. & Liscum, E. Arabidopsis NPH3: A NPH1 photoreceptor-interacting protein essential for phototropism. Science 286<\/b>, 961\u2013964 (1999).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Reuter, L. et al. Light-triggered and phosphorylation-dependent 14-3-3 association with NON-PHOTOTROPIC HYPOCOTYL 3 is required for hypocotyl phototropism. Nat. Commun. 12<\/b>, 6128 (2021).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Zhao, X. et al. Phot2-regulated relocation of NPH3 mediates phototropic response to high-intensity blue light in Arabidopsis thaliana. J. Integr. Plant Biol. 60<\/b>, 562\u2013577 (2018).<\/p>\n<\/li>\n

  • \n

    Roberts, D. et al. Modulation of phototropic responsiveness in Arabidopsis through ubiquitination of phototropin 1 by the CUL3-ring E3 ubiquitin ligase CRL3NPH3[W]. Plant Cell 23<\/b>, 3627\u20133640 (2011).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Suetsugu, N. & Wada, M. Two coiled-coil proteins, WEB1 and PMI2, suppress the signaling pathway of chloroplast accumulation response that is mediated by two phototropin-interacting proteins, RPT2 and NCH1, in seed plants. Int. J. Mol. Sci. 18<\/b>, 1469 (2017).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Suetsugu, N. et al. RPT2\/NCH1 subfamily of NPH3-like proteins is essential for the chloroplast accumulation response in land plants. Proc. Natl. Acad. Sci. USA 113<\/b>, 10424\u201310429 (2016).<\/p>\n<\/li>\n

  • \n

    Bouch\u00e9, N., Scharlat, A., Snedden, W., Bouchez, D. & Fromm, H. A novel family of Calmodulin-binding transcription activators in multicellular organisms. J. Biol. Chem. 277<\/b>, 21851\u201321861 (2002).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    T\u00e4htiharju, S., Sangwan, V., Monroy, A. F., Dhindsa, R. S. & Borg, M. The induction of kin genes in cold-acclimating Arabidopsis thaliana. Evidence of a role for calcium. Planta 203<\/b>, 442\u2013447 (1997).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Yang, L. et al. Potato NPH3\/RPT2-like protein StNRL1, targeted by a phytophthora infestans RXLR effector, is a susceptibility factor1[OPEN]. Plant Physiol. 171<\/b>, 645\u2013657 (2016).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Naqvi, S. et al. Blue-light receptor phototropin 1 suppresses immunity to promote Phytophthora infestans infection. New Phytol. 233<\/b>, 2282\u20132293 (2022).<\/p>\n<\/li>\n

  • \n

    Khan, I. et al. Calcium-promoted interaction between the C2-domain protein EHB1 and metal transporter IRT1 inhibits arabidopsis iron acquisition. Plant Physiol. 180<\/b>, 1564\u20131581 (2019).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Stoelzle, S., Kagawa, T., Wada, M., Hedrich, R. & Dietrich, P. Blue light activates calcium-permeable channels in Arabidopsis mesophyll cells via the phototropin signaling pathway. Proc. Natl Acad. Sci. USA 100<\/b>, 1456\u20131461 (2003).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Harada, A., Sakai, T. & Okada, K. phot1 and phot2 mediate blue light-induced transient increases in cytosolic Ca2+ differently in Arabidopsis leaves. Proc. Natl. Acad. Sci. USA 100<\/b>, 8583\u20138588 (2003).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    \u0141abuz, J. et al. Blue light-dependent changes in loosely bound calcium in Arabidopsis mesophyll cells: an X-ray microanalysis study. J. Exp. Bot. 67<\/b>, 3953\u20133964 (2016).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Lehmann, P. et al. Transitions of gene expression induced by short-term blue light. Plant Biol. 13<\/b>, 349\u2013361 (2011).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Sablowski, R. & Carnier Dornelas, M. Interplay between cell growth and cell cycle in plants. J. Exp. Bot. 65<\/b>, 2703\u20132714 (2014).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Lee, H. O., Davidson, J. M. & Duronio, R. J. Endoreplication: polyploidy with purpose. Genes Dev. 23<\/b>, 2461\u20132477 (2009).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Huala, E. et al. Arabidopsis NPH1: A protein kinase with a putative redox-sensing domain. Science 278<\/b>, 2120\u20132123 (1997).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Anders, S., Pyl, P. T. & Huber, W. HTSeq\u2014a Python framework to work with high-throughput sequencing data. Bioinformatics 31<\/b>, 166\u2013169 (2015).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Robinson, M. D., McCarthy, D. J. & Smyth, G. K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26<\/b>, 139\u2013140 (2010).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Li, C., Deans, N. C. & Buell, C. R. Simple Tidy GeneCoEx\u201d: A gene co-expression analysis workflow powered by tidyverse and graph-based clustering in R. Plant Genome 16<\/b>, e20323 (2023).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Csardi, G. & Nepusz, T. The igraph software package for complex network research. Int. J. 1695<\/b>, http:\/\/igraph.org<\/a> (2006).<\/p>\n<\/li>\n

  • \n

    Huang, D. W., Sherman, B. T. & Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4<\/b>, 44\u201357 (2008).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Sherman, B. T. et al. DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update). Nucleic Acids Res. 50<\/b>, W216\u2013W221 (2022).<\/p>\n


    \n Google Scholar<\/a>\u00a0\n <\/p>\n<\/li>\n

  • \n

    Borevitz, J. O., Xia, Y., Blount, J., Dixon, R. A. & Lamb, C. Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. Plant Cell 12<\/b>, 2383\u20132393 (2000).<\/p>\n


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