{"id":135067,"date":"2025-05-27T05:00:22","date_gmt":"2025-05-27T05:00:22","guid":{"rendered":"https:\/\/www.europesays.com\/uk\/135067\/"},"modified":"2025-05-27T05:00:22","modified_gmt":"2025-05-27T05:00:22","slug":"orange-cats-were-a-genetic-mystery-scientists-have-finally-solved-it","status":"publish","type":"post","link":"https:\/\/www.europesays.com\/uk\/135067\/","title":{"rendered":"Orange Cats Were a Genetic Mystery. Scientists Have Finally Solved It."},"content":{"rendered":"<p data-journey-content=\"true\" data-node-id=\"0\" class=\"css-i9p093 emevuu60\">Here\u2019s what you\u2019ll learn when you read this story: <\/p>\n<ul data-node-id=\"1\" class=\"css-1wk73g0 emevuu60\">\n<li data-node-id=\"1.0\">The gene that causes orange coloration in cats had been pondered for years, but never actually found\u2014until now.<\/li>\n<li data-node-id=\"1.1\">Cats with orange coats get them from a deletion (meaning a missing segment) mutation in the noncoding region of a gene associated with both neuroendocrine tissues and pigmentation.<\/li>\n<li data-node-id=\"1.2\">There are more male orange cats than females because this gene is located on the X-chromosome, which males only have one copy of. Females are more likely to be tortoiseshell or calico because they have two X chromosomes, and therefore have more genetic coat color options to \u2018choose\u2019 from.<\/li>\n<\/ul>\n<p data-journey-content=\"true\" data-node-id=\"3\" class=\"css-i9p093 emevuu60\">Garfield might be the most iconic orange tabby around, but Hollywood has seen quite a few leading cats of the same color\u2014Heathcliff, Oliver, Hiyao Miyazaki\u2019s adorably terrifying Catbus from My Neighbor Totoro, and Morris from <a href=\"https:\/\/www.youtube.com\/watch?v=Xt8ichfLEXQ\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.youtube.com\/watch?v=Xt8ichfLEXQ\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"those retro cat food commercials\" data-node-id=\"3.3\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">those retro cat food commercials<\/a> all come to mind. Like most celebrities, they have so far refused to give up their most guarded beauty secret\u2014how did they get those fabulous golden auburn <a href=\"https:\/\/www.popularmechanics.com\/science\/animals\/a64356221\/glitter-gene-bengal-cat\/\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.popularmechanics.com\/science\/animals\/a64356221\/glitter-gene-bengal-cat\/\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"coats\" data-node-id=\"3.5\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">coats<\/a>?<\/p>\n<p data-journey-content=\"true\" data-node-id=\"4\" class=\"css-i9p093 emevuu60\">Hiroyuki Sasaki\u2014a cat enthusiast and geneticist at Kyushu University in Japan\u2014was determined to identify the elusive gene that carries the orange mutation in Felis silvestris catus (the <a href=\"https:\/\/www.popularmechanics.com\/science\/a64769980\/similarities-cats-dogs\/\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.popularmechanics.com\/science\/a64769980\/similarities-cats-dogs\/\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"domesticated cat\" data-node-id=\"4.3\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">domesticated cat<\/a>). He and his research team analyzed DNA in skin tissue from cats with and without orange fur, and found a mutation to the <a href=\"https:\/\/www.proteinatlas.org\/ENSG00000147256-ARHGAP36\/brain\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.proteinatlas.org\/ENSG00000147256-ARHGAP36\/brain\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"ARHGAP36\" data-node-id=\"4.5\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">ARHGAP36<\/a> gene. This was a type of deletion mutation, meaning that a segment of a gene is missing. In orange cats, the missing segment is located on an <a href=\"https:\/\/news.ucsc.edu\/2022\/11\/russ-origins-introns\/\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/news.ucsc.edu\/2022\/11\/russ-origins-introns\/\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"intron\" data-node-id=\"4.7\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">intron<\/a>, or noncoding region, of the ARHGAP36 gene, which is also in neuroendocrine tissues (especially the hypothalamus), adrenal glands, and pituitary glands.<\/p>\n<p>Related Story<\/p>\n<p data-journey-content=\"true\" data-node-id=\"7\" class=\"css-i9p093 emevuu60\">The location of the mutation on this particular gene also explains why there are so many more male orange cats than female ones. ARHGAP36 is known as X-linked, meaning that it is located on the X chromosome. In female cats (and all female mammals), one of the two X chromosomes in each cell is randomly switched off in a process known as <a href=\"https:\/\/go.redirectingat.com?id=74968X1525083&amp;url=https%3A%2F%2Fwww.nature.com%2Fscitable%2Ftopicpage%2Fx-chromosome-x-inactivation-323%2F%23%3A~%3Atext%3DRandom%2520X%2520Inactivation%26text%3DEach%2520female%2520cell%2520has%2520the%2Clargely%2520by%2520XIST%2520and%2520TSIX\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.nature.com\/scitable\/topicpage\/x-chromosome-x-inactivation-323\/#:~:text=Random%20X%20Inactivation&amp;text=Each%20female%20cell%20has%20the,largely%20by%20XIST%20and%20TSIX\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"X chromosome inactivation\" data-vars-ga-product-id=\"b1c789ae-d383-4d2b-8fef-224fec1c54e4\" rel=\"nofollow noopener\" data-node-id=\"7.1\" data-href=\"https:\/\/www.nature.com\/scitable\/topicpage\/x-chromosome-x-inactivation-323\/#:~:text=Random%20X%20Inactivation&amp;text=Each%20female%20cell%20has%20the,largely%20by%20XIST%20and%20TSIX\" data-product-url=\"https:\/\/www.nature.com\/scitable\/topicpage\/x-chromosome-x-inactivation-323\/#:~:text=Random%20X%20Inactivation&amp;text=Each%20female%20cell%20has%20the,largely%20by%20XIST%20and%20TSIX\" data-affiliate=\"true\" data-affiliate-url=\"https:\/\/go.redirectingat.com?id=74968X1525083&amp;url=https%3A%2F%2Fwww.nature.com%2Fscitable%2Ftopicpage%2Fx-chromosome-x-inactivation-323%2F%23%3A~%3Atext%3DRandom%2520X%2520Inactivation%26text%3DEach%2520female%2520cell%2520has%2520the%2Clargely%2520by%2520XIST%2520and%2520TSIX\" data-affiliate-network=\"{&quot;afflink_redirect&quot;:&quot;\/_p\/afflink\/ue5W\/nature-noncoding-rnas-and-x-inactivation&quot;,&quot;site_id&quot;:&quot;a4f9566a-1fd0-484c-b731-150b9bda9ffa&quot;,&quot;network&quot;:{&quot;name&quot;:&quot;Skimlinks&quot;}}\" data-vars-ga-product-price=\"$0.00\" data-vars-ga-product-retailer-id=\"e1502302-abba-4a0b-a717-4417f67ff8b9\" data-vars-ga-link-treatment=\"(not set) | (not set)\" class=\"body-link product-links css-1kk1geb e1aq0z090\">X chromosome inactivation<\/a>, so even if the mutation is present, it is unlikely that it will be expressed by every cell and appear as an even (or even semi-even) orange coat. To be orange, a female cat must have the orange gene on both <a href=\"https:\/\/www.popularmechanics.com\/science\/animals\/a61156982\/y-chromosome-evolution-great-apes-study\/\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.popularmechanics.com\/science\/animals\/a61156982\/y-chromosome-evolution-great-apes-study\/\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"X chromosomes\" data-node-id=\"7.3\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">X chromosomes<\/a>, so no matter which one is deleted, the orange gene still dominates.<\/p>\n<p data-journey-content=\"true\" data-node-id=\"8\" class=\"css-i9p093 emevuu60\">Male cats, on the other hand, only have one X chromosome, and are therefore much more likely to evenly express that mutation. <\/p>\n<p data-journey-content=\"true\" data-node-id=\"9\" class=\"css-i9p093 emevuu60\">Whether orange or not, all fur pigmentation genes are X-linked. Calico and tortoiseshell coats also come from different combinations of activated X chromosomes\u2014both with and without the deletion that results in orange\u2014which explains why most of them are female.  For this to happen to a male cat, there would have to be two X chromosomes present next to the <a href=\"https:\/\/www.popularmechanics.com\/science\/health\/a44912664\/y-chromosome-sequenced\/\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.popularmechanics.com\/science\/health\/a44912664\/y-chromosome-sequenced\/\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"Y chromosome\" data-node-id=\"9.3\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">Y chromosome<\/a> in order for random inactivation to result in mottled fur.<\/p>\n<p data-journey-content=\"true\" data-node-id=\"10\" class=\"css-i9p093 emevuu60\">Sasaki and his team found that ARHGAP36 was most active in <a href=\"https:\/\/pmc.ncbi.nlm.nih.gov\/articles\/PMC3834696\/#:~:text=Melanocyte%20is%20a%20highly%20differentiated,the%20basic%20function%20of%20melanocyte\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/pmc.ncbi.nlm.nih.gov\/articles\/PMC3834696\/#:~:text=Melanocyte%20is%20a%20highly%20differentiated,the%20basic%20function%20of%20melanocyte\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"melanocytes\" data-node-id=\"10.1\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">melanocytes<\/a> (cells in the skin which produce pigment) found in the orange patches of calicos and tortoiseshells. Genes promoting <a href=\"https:\/\/pmc.ncbi.nlm.nih.gov\/articles\/PMC3699939\/#:~:text=Melanocytes%20are%20responsible%20for%20the,melanosome%20transfer%20to%20neighboring%20keratinocytes\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/pmc.ncbi.nlm.nih.gov\/articles\/PMC3699939\/#:~:text=Melanocytes%20are%20responsible%20for%20the,melanosome%20transfer%20to%20neighboring%20keratinocytes\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"melanogenesis\" data-node-id=\"10.3\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">melanogenesis<\/a>, or the production of <a href=\"https:\/\/www.popularmechanics.com\/science\/health\/a43656366\/everyone-with-blue-eyes-may-come-from-same-human-ancestor\/\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.popularmechanics.com\/science\/health\/a43656366\/everyone-with-blue-eyes-may-come-from-same-human-ancestor\/\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"melanin\" data-node-id=\"10.5\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">melanin<\/a> in melanocytes, suppress ARHGAP36 and are upregulated in brown, black, and gray patches. These colors are associated with the black or brown pigment known as <a href=\"https:\/\/www.sciencedirect.com\/topics\/medicine-and-dentistry\/eumelanin\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.sciencedirect.com\/topics\/medicine-and-dentistry\/eumelanin\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"eumelanin\" data-node-id=\"10.7\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">eumelanin<\/a>, which is also the most common form of melanin.<\/p>\n<p>Related Story<\/p>\n<p data-journey-content=\"true\" data-node-id=\"12\" class=\"css-i9p093 emevuu60\">Sasaki believes that when a mutated ARHGAP36 is expressed as orange fur in cats, the missing part of the gene would have suppressed orange coloration had it been present. In cats, mutated ARHGAP36 was shown to suppress other <a href=\"https:\/\/www.popularmechanics.com\/science\/health\/a64815804\/crispr-therapy\/\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.popularmechanics.com\/science\/health\/a64815804\/crispr-therapy\/\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"genes\" data-node-id=\"12.1\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">genes<\/a> involved in the production of eumelanin so that it could instead produce a different type of melanin called <a href=\"https:\/\/www.sciencedirect.com\/topics\/neuroscience\/pheomelanin\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.sciencedirect.com\/topics\/neuroscience\/pheomelanin\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"pheomelanin\" data-node-id=\"12.5\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">pheomelanin<\/a>, which is the reddish-yellow pigment in orange fur. Found only in mammals and birds, pheomelanin is also behind red hair in humans and flashy red feathers in some bird species.<\/p>\n<p data-journey-content=\"true\" data-node-id=\"13\" class=\"css-i9p093 emevuu60\">It seems that high ARHGAP36 activity is, in general, associated with reduced activity in genes involved with the production of eumelanin. Sasaki is convinced that this gene\u2019s takeover may somehow shift <a href=\"https:\/\/www.popularmechanics.com\/science\/animals\/a20762108\/green-blooded-lizards-live-with-a-pigment-that-should-kill-them\/\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.popularmechanics.com\/science\/animals\/a20762108\/green-blooded-lizards-live-with-a-pigment-that-should-kill-them\/\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"pigment\" data-node-id=\"13.1\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">pigment<\/a> production to pheomelanin instead\u2014though, how exactly it pulls this off is still unknown. And because ARHGAP36 also has significant importance in the brain, there is even speculation as to whether there are true associations between fur color and personality (the confirmation of which could either prove or silence all the <a href=\"https:\/\/obviousplant.com\/products\/stupidest-animals-orange-cats?variant=47096932499649\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/obviousplant.com\/products\/stupidest-animals-orange-cats?variant=47096932499649\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"orange cat memes\" data-node-id=\"13.3\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">orange cat memes<\/a> out there).<\/p>\n<p data-journey-content=\"true\" data-node-id=\"14\" class=\"css-i9p093 emevuu60\">\u201cAlthough it is not fully understood how the identified deletion switches the pigment species, the variation likely dominates the cat population with orange coat color,\u201d the researchers <a href=\"https:\/\/www.cell.com\/current-biology\/fulltext\/S0960-9822(25)00391-4?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0960982225003914%3Fshowall%3Dtrue\" target=\"_blank\" data-vars-ga-outbound-link=\"https:\/\/www.cell.com\/current-biology\/fulltext\/S0960-9822(25)00391-4?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0960982225003914%3Fshowall%3Dtrue\" data-vars-ga-ux-element=\"Hyperlink\" data-vars-ga-call-to-action=\"wrote\" data-node-id=\"14.1\" class=\"body-link css-1kk1geb emevuu60\" rel=\"noopener\">wrote<\/a>.<\/p>\n<p data-journey-content=\"true\" data-node-id=\"15\" class=\"css-i9p093 emevuu60\">Somewhere, Garfield is smugly beaming next to a tray of lasagna.<\/p>\n<p><img src=\"https:\/\/www.europesays.com\/uk\/wp-content\/uploads\/2025\/05\/4e76c835-faea-430d-b35c-1d6bd85f7d11_1727374181.file\" alt=\"Headshot of Elizabeth Rayne\" title=\"Headshot of Elizabeth Rayne\" width=\"100%\" height=\"100%\" decoding=\"async\" loading=\"lazy\" class=\"css-o0wq4v ev8dhu53\"\/><\/p>\n<p>Elizabeth Rayne is a creature who writes. Her work has appeared in Popular Mechanics, Ars Technica, SYFY WIRE, Space.com, Live Science, Den of Geek, Forbidden Futures and Collective Tales. She lurks right outside New York City with her parrot, Lestat. When not writing, she can be found drawing, playing the piano or shapeshifting.<\/p>\n","protected":false},"excerpt":{"rendered":"Here\u2019s what you\u2019ll learn when you read this story: The gene that causes orange coloration in cats had&hellip;\n","protected":false},"author":2,"featured_media":135068,"comment_status":"","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[3846],"tags":[267,12,70,16,15],"class_list":{"0":"post-135067","1":"post","2":"type-post","3":"status-publish","4":"format-standard","5":"has-post-thumbnail","7":"category-genetics","8":"tag-genetics","9":"tag-news","10":"tag-science","11":"tag-uk","12":"tag-united-kingdom"},"share_on_mastodon":{"url":"https:\/\/pubeurope.com\/@uk\/114578038796585207","error":""},"_links":{"self":[{"href":"https:\/\/www.europesays.com\/uk\/wp-json\/wp\/v2\/posts\/135067","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.europesays.com\/uk\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.europesays.com\/uk\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.europesays.com\/uk\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.europesays.com\/uk\/wp-json\/wp\/v2\/comments?post=135067"}],"version-history":[{"count":0,"href":"https:\/\/www.europesays.com\/uk\/wp-json\/wp\/v2\/posts\/135067\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.europesays.com\/uk\/wp-json\/wp\/v2\/media\/135068"}],"wp:attachment":[{"href":"https:\/\/www.europesays.com\/uk\/wp-json\/wp\/v2\/media?parent=135067"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.europesays.com\/uk\/wp-json\/wp\/v2\/categories?post=135067"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.europesays.com\/uk\/wp-json\/wp\/v2\/tags?post=135067"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}